Основные публикации сотрудников института 

(монографии и статьи в рецензируемых журналах) за период 2000-2024 гг. 

-2024-

• Thermal tolerance of a freshwater amphipod Gammarus lacustris can be enhanced by acclimation to higher mineralization.  Kondrateva, E., Vereshchagina, K.,  Mutin, A.,  Timofeyev, M. Comparative Biochemistry and Physiology -Part A : Molecular and Integrative Physiology , 2024, 292, 111622 (IF 2.3, Q1)

• Drozdova P, Gurkov A, Saranchina A, Vlasevskaya A, Zolotovskaya E, Indosova E, Timofeyev M, Borvinskaya E. Transcriptional response of Saccharomyces cerevisiae to lactic acid enantiomers. Appl Microbiol Biotechnol. 2024 Dec;108(1):121. doi: 10.1007/s00253-023-12863-z. (IF 5, Q1)

-2023-

•  L. Carrea, C.J. Merchant, J.-F. Creatux, T.M. Dokulil, H.A. Dugan, B. Gibbes, A. Laas, E.M. Leibensperger, S. Maberly, L. May, S.-I. Matsuzaki, G. Monet, D. Pierson, M. Pulkkanen, O.O. Rusanovskaya, S.V. Shimaraeva, E.A. Silow, M. Schmid, M.A. Timofeyev, P. Verburg, and R. I. Woolway, 2023: Lake surface temperature [in “State of the Climate in 2022”]. Bull. Amer. Meteor. Soc., 104 (9), Si–S501   (IF 8.77, Q1)

• Borvinskaya E., Matrosova S., Sukhovskaya I., Drozdova P., Titov  E., Anikienko I., Lubyaga Y., Gurkov A., Timofeyev M. Tissue Reaction to Low-Density Polyacrylamide Gel as a Carrier for Mi-croimplants in the Adipose Fin of Rainbow Trout. Gels 2023, 9, 629. (IF 4.6, Q1)    

• Lubyaga Y, Yarinich L, Drozdova P, Pindyurin A, Gurkov A, Luckenbach T, Timofeyev M. The ABCs of the amphipod P-glycoprotein: Heterologous production of the Abcb1 protein of a model species Eulimnogammarus verrucosus (Amphipoda: Gammaridae) from Lake Baikal. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology. 2023 9:109677. (IF 4.5, Q1)

• Nazarova, A.; Gurkov, A.; Rzhechitskiy, Y.; Shchapova, E.; Mutin, A.; Saranchina, A.; Diagileva, A.; Bolbat, N.; Krivoshapkin, P.; Timofeyev, M. Turn a Shrimp into a Firefly: Monitoring Tissue pH in Small Crustaceans Using an Injectable Hydrogel Sensor with Infrared Excitation and Visible Luminescence. Photonics 2023, 10, 697. (IF 2.5, Q2)

• Martemyanov V.,  Akhanaev Y.,  Belousova I., Pavlusin S.,  Yakimova M.,  Kharlamova D.,  Ageev A., Golovina A.,  Astapenko S.,  Kolosov A., Ananko G., Taranov O.,  Shvalov A., Bodnev S., Ershov N.,  Grushevaya I., Timofeyev M., Tokarev S. (2023) Microbiology Spectrum, doi: 10.1128/spectrum.03855-22  (IF 9.02, Q1)

•  Fontaneto D., E. Sottoriva, A. Rodríguez-Gijón, D. Bedulina, A. Gurkov, O. A. Timoshkin & V. N. Ivanenko (2023) Limited diversity of epibiont bdelloid rotifers and no pattern of codiversification with the highly diverse endemic amphipods of a coastal zone of Lake Baikal, The European Zoological Journal, 90:1, 354-365 (IF 1.6, Q2)     

-2022-

• Rzhechitskiy, Y.; Gurkov, A.; Bolbat, N.; Shchapova, E.; Nazarova, A.; Timofeyev, M.; Borvinskaya, E. Adipose Fin as a Natural “Optical Window” for Implantation of Fluorescent Sensors into Salmonid Fish. Animals 2022, 12, 3042. (IF 3.23, Q1)
• Shchapova E, Titov E, Gurkov A, Nazarova A, Borvinskaya E, Timofeyev M. Durability of Implanted Low-Density Polyacrylamide Hydrogel Used as a Scaffold for Microencapsulated Molecular Probes inside Small Fish. Polymers. 2022; 14(19):3956. (IF 4.96, Q1)
• Meyer F.,  T. Ozersky, K.H. Woo, K. Shchapov, A.W.E. Galloway, J.B. Schram, E.J. Rosi, D.D. Snow, M.A. Timofeyev, D.Yu. Karnaukhov, M.R. Brousil, S.E. Hampton.  Effects of spatially heterogeneous lakeside development on nearshore biotic communities in a large, deep, oligotrophic lake. Limnology and oceanography, 2022 (IF 4.9, Q1) 
• Drozdova, P.; Saranchina, A.; Madyarova, E.; Gurkov, A.; Timofeyev, M. Experimental Crossing Confirms Reproductive Isolation between Cryptic Species within Eulimnogammarus verrucosus (Crustacea: Amphipoda) from Lake Baikal. Int. J. Mol. Sci. 2022, 23, 10858 (IF 6.2, Q1)
• Madyarova, E.; Shirokova, Y.; Gurkov, A.; Drozdova, P.; Baduev, B.; Lubyaga, Y.; Shatilina, Z.; Vishnevskaya, M.; Timofeyev, M. Metabolic Tolerance to Atmospheric Pressure of Two Freshwater Endemic Amphipods Mostly Inhabiting the Deep-Water Zone of the Ancient Lake Baikal. Insects 2022, 13, 578 (IF 3.1, Q1).
• Popov A., Timofeyev M., Bykov A., Meglinski I. “Luminescent upconversion nanoparticles evaluating temperature-induced stress experienced by aquatic organisms owing to environmental variations”, iScience, 2022, 25, 104568 (IF 6.1, Q1).
• Karnaukhov, D., Biritskaya, S., Dolinskaya, Okholina, A., Silow, E. Distribution Features of Microplastic Particles in the Bolshiye Koty Bay (Lake Baikal, Russia) in Winter, Pollution, 2022, 8(2), стр. 435–446 .
• Meyer, M.F., Ozersky, T., Woo, K.H., K.Shchapov, A. Galloway, J. Schram, D. Snow, M. Timofeyev, D. Karnaukhov, M. Brousil, Hampton S.E.  A unified dataset of colocated sewage pollution, periphyton, and benthic macroinvertebrate community and food web structure from Lake Baikal (Siberia).   Limnology And Oceanography Letters, 2022, 7(1), стр. 62–79 (Q1, IF 7,78).

-2021-

• Gatter T., S. Löhneysen, J. Fallmann, P. Drozdova, T. Hartmann, Stadler P.F.  LazyB: fast and cheap genome assembly. Algorithms for Molecular Biology, 2021, volume 16, Article number: 8 (IF 1.4).
• Borvinskaya, E., Kochneva, A., Bedulina, D., Smirnov, L., Babkina, I. Comparative Analysis of Proteins of Functionally Different Body Parts of the Fish Parasites Triaenophorus nodulosus and Triaenophorus crassus.  2021, Acta Parasitologica, 66(4), стр. 1137–1150 (IF 1.4).
• Meyer, M.F., Ozersky, T., Woo, K.H., Shchapov, K., Galloway, A.W.E., Schram, J.B., Snow, D.D., Timofeyev, M.A., Karnaukhov, D.Y., Brousil, M.R. and Hampton, S.E. (2021), A unified dataset of colocated sewage pollution, periphyton, and benthic macroinvertebrate community and food web structure from Lake Baikal (Siberia). Limnology and Oceanography Letters (Q1, IF 7.8).
• Lipaeva, P., Vereshchagina, K., Drozdova, P., Jakob, L., Kondrateva, E., Lucassen, M., Bedulina, D., Timofeyev, M., Stadler, P., & Luckenbach, T. (2021). Different ways to play it cool: Transcriptomic analysis sheds light on different activity patterns of three amphipod species under long-term cold exposure. Molecular Ecology, 00, 1– 17. https://doi.org/10.1111/mec.16164 (Q1, IF 6.1).
• Barbitoff, Y. A., Matveenko, A. G., Matiiv, A. B., Maksiutenko, E. M., Moskalenko, S. E., Drozdova, P. B., Polev, D. E., Beliavskaia, A. Y., Danilov, L. G., Predeus, A. V., & Zhouravleva, G. A. (2021). Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage. G3 (Bethesda, Md.), 11(4), jkab029. (Q1, IF 2.7).
• Bedulina D., Drozdova P., Gurkov A., M.Bergen, P.F. Stadler, T. Luckenbach, M. Timofeyev, S. Kalkhof. . Proteomics reveals sex-specific heat shock response of Baikal amphipod Eulimnogammarus cyaneus, Science of The Total Environment, Volume 763, 143008 (2021) (Q1, IF 7.9).
• Pilla, R.M., Mette, E.M., Williamson, C.E.,.. H.V. Pislegina,.. O.O. Rusanovskaya,... S.V. Shimaraeva, Eugene A. Silow,.. M.A. Timofeyev et al. Global data set of long-term summertime vertical temperature profiles in 153 lakes. Scientific Data (Nature Publishing Group)8, 200  (2021) (Q1, IF 5.5).
• Shchapova, E., Nazarova, A., Vasilyeva, U. et al. Cellular Immune Response of an Endemic Lake Baikal Amphipod to Indigenous Pseudomonas sp. Marine Biotechnology (2021).  (Q1, IF 3.4).
• Kraemer, B.M., Pilla, R.M., Woolway, R.I... Silow, E.A.... Timofeyev, M.A... et al. Climate change drives widespread shifts in lake thermal habitat. Nature Climate Change (2021).  (Q1, IF 20.893).
• Vereshchagina, K., Kondrateva, E., Mutin, A. et al. Low annual temperature likely prevents the Holarctic amphipod Gammarus lacustris from invading Lake Baikal. Sci Rep 11, 10532 (2021). (Q1, IF 3.998).
• Drozdova, P., Kizenko, A., Saranchina, A. et al. The diversity of opsins in Lake Baikal amphipods (Amphipoda: Gammaridae). BMC Ecol Evo 21, 81 (2021). (Q1, IF 3.045).
• Karnaukhov, D., Teplykh, M., Dolinskaya, D.,  Biritskaya S., Ermolaeva Y., Viktoria Pushnica, I. Kuznetsova, Bukhaeva, L., Silow, E.  Light pollution affects the coastal zone of Lake Baikal (2021) Limnological Review, 21(3), стр. 165–168.
• Karnaukhov DYu, Dolinskaya EM, Biritskaya SA, Teplykh MA, Ermolaeva YK, Pushnica VA, Kuznetsova IV, Okholina AI, Bukhaeva LB, Rusanovskaya OO, Silow EA (2021) New data regarding ecology of freshwater pelagic amphipod Macrohectopus branickii and other crustaceans of plankton from the southern part of Lake Baikal. Acta Biologica Sibirica 7: 39-48..
• Pekkoeva, S.N., Voronin, V.P., Shatilina, Z.M. Madyarova E.V.,  Axenov-Gribanov D.V.,  Shirokova Y.A., Timofeyev M.A., Nemova N.N., Murzina S.A. Lipid and fatty acid composition of scavenging amphipods Ommatogammarus spp. from different depths of lake Baikal. Limnology (2021). (Q2, IF 1.625).
• Borvinskaya E, Gurkov A, Shchapova E, Mutin A, Timofeyev M. 2021. Histopathological analysis of zebrafish after introduction of non-biodegradable polyelectrolyte microcapsules into the circulatory system. PeerJ 9:e11337 (Q2, IF 2.38).
• Brown KP, Gerber A, Bedulina D, Timofeyev MA. Human impact and ecosystemic health at Lake Baikal. Wiley Interdisciplinary Reviews: Water. 2021; e1528. (Q1, IF 4.4).
• Jakob, L., Vereshchagina, K.P., Tillmann, A. et al. Thermal reaction norms of key metabolic enzymes reflect divergent physiological and behavioral adaptations of closely related amphipod species. Sci Rep 11, 4562 (2021). (Q1, IF 3.998).

-2020-

• Pilla, R.M., Williamson, C.E., Adamovich, B.V. et al. Deeper waters are changing less consistently than surface waters in a global analysis of 102 lakes. Sci Rep 10, 20514, 2020 (Q1, IF 3.998).
• Carrea L., R. I. Woolway, C. J. Merchant, M. T. Dokulil, C. L. DeGasperi, E. de Eyto, S. Kelly, R.S. La Fuente, W. Marszelewski, L. May, A. M. Paterson, M. Pulkkanen, J. A. Rusak, O. Rusanovskaya, S. G. Schladow, M. Schmid, S. V. Shimaraeva, E. A. Silow, M. A. Timofeyev, P. Verburg, S. Watanabe, and G. A. Weyhenmeyer, 2020: Lake surface temperature [in “State of the Climate in 2019”]. Bull. Amer. Meteor. Soc., 101 (8), Si–S429  (Q1, IF - 9.384).
• Kochneva, A., Drozdova, P., Borvinskaya, E. The first transcriptomic resource for the flatworm Triaenophorus nodulosus (Cestoda: Bothriocephalidea), a common parasite of holarctic freshwater fish (2020) Marine Genomics, 51,   № 100702.
• Drozdova P, Saranchina A, Morgunova M, Kizenko A, Lubyaga Y, Baduev B, Timofeyev M. 2020. The level of putative carotenoid-binding proteins determines the body color in two species of endemic Lake Baikal amphipods. PeerJ 8:e9387 (Q1, IF 2.35).
• Burskaia V., S. Naumenko, M. Schelkunov, D. Bedulina, T. Neretina, A. Kondrashov, L. Yampolsky, G.A Bazykin, Excessive parallelism in protein evolution of Lake Baikal amphipod species flock, Genome Biology and Evolution, 2020, evaa138. (IF 3.4, Q1).
• Ozersky T., Nakov T., Hampton S., Rodenhouse N., Shchapov K., Woo K., Wright K., Pislegina E., Izmesteva L., Silow E., Timofeyev M., Moore M. “Hot and sick? Impacts of warming and a parasite on the dominant zooplankter of Lake Baikal”, Limnology and Oceanography, 2020, V.65, 11,  P. 2772-2786 (IF 4.325, Q1).
• Lubyaga et al. "Invader amphipods Gmelinoides fasciatus (Stebbing, 1899) inhabiting distant waterbodies demonstrate differences in tolerance and energy metabolism under elevated temperatures" Journal of Great Lakes Research (IF 2.17,Q1).
• Voitsekhovskaia, I.; Paulus, C.; Dahlem, C.; Rebets, Y.; Nadmid, S.; Zapp, J.; Axenov-Gribanov, D.; Rückert, C.; Timofeyev, M.; Kalinowski, J.; Kiemer, A.K.; Luzhetskyy, A. Baikalomycins A-C, New Aquayamycin-Type Angucyclines Isolated from Lake Baikal Derived Streptomyces sp. IB201691-2A. Microorganisms 2020, 8, 680. (IF 3.8).
• Drozdova, P., Madyarova, E., Dimova, M., Gurkov, A., Vereshchagina, K., Adelshin,R.,  Timofeyev,  M.,  The  diversity  of  microsporidian  parasites  infecting  the  Holarctic  amphipod Gammaruslacustris  from  the  Baikal  region  is  dominated  by  the  genus Dictyocoela, Journal  of  Invertebrate  Pathology (2020).
• Protasov ES, Axenov-Gribanov DV, Shatilina ZM, Timofeyev MA, Lane AL (2020) Freshwater Actinobacteria from sediments of the deep and ancient Lake Baikal (Russia) and their genetic potential as producers of secondary metabolites. Aquatic Microbial Ecology 84:1-14.
• Protasov, E.S., Axenov-Gribanov, D.V., Rzhechitsky, Y.A. V. A. Emshanova, Y. A. Shirokova, M. A. Timofeyev. Diversity of culturable actinobacteria associated with deepwater endemic amphipods of Lake Baikal and study of their biosynthetic capabilities.  Limnology (2020).

• Shatilina Zh., P. Drozdova, D. Bedulina, L. Rivarola-Duarte, S. Schreiber, C. Otto, F. Jühling, S. Aulhorn, W. Busch, Y. Lubyaga, E. Kondrateva, T. Pobezhimova, L. Jakob, M. Lucassen, F. J. Sartoris, J. Hackermüller, H.O. Pörtner, P.F. Stadler, T. Luckenbach (2020) Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 33,100630.
• P.B. Drozdova, Y.A. Barbitoff, M.V. Belousov, R.K. Skitchenko, T.M. Rogoza, J.Y. Leclercq, A.V. Kajava, A.G. Matveenko, G.A. Zhouravleva, S.A. Bondarev (2020) Estimation of amyloid aggregate sizes with semi-denaturing detergent agarose gel electrophoresis and its limitations, Prion, 14:1, 118-128,

-2019-

• Axenov-Gribanov, D. V., Bedulina, D. S., Shirokova, Y. A., Emshanova, V. A., Lubyaga, Y. A., Vereshchagina, K. P., Saranchina, A. E., Pobezhimova, T. P., & Timofeyev, M. A. (2019). Diet influence on mechanisms of non-specific stress-response in Baikal endemic amphipod species during long-term laboratory exposure, Crustaceana, 92(11-12), 1349-1368.
• Protasov E.S. Diversity of culturable actinobacteria associated with deepwater endemic amphipods of Lake Baikal and study of their biosynthetic capabilities / E.S. Protasov, D.V. Axenov-Gribanov, Y.A. Rzhechitsky, V.A. Emshanova, Y.A. Shirokova, M.A. Timofeyev // Limnology.– 2019.– P. 1-13. DOI: 10.1007/s10201-019-00593-z  
• Shatilina Zh., P. Drozdova, D. Bedulina, L. Rivarola-Duarte, S. Schreiber, C. Otto, F. Jühling, S. Aulhorn, W. Busch, Y. Lubyaga, E. Kondrateva, T. Pobezhimova, L. Jakob, M. Lucassen, F. J. Sartoris, J. Hackermüller, H.O. Pörtner, P.F. Stadler, T. Luckenbach (2020) Transcriptome-level effects of the model organic pollutant phenanthrene and its solvent acetone in three amphipod species. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics. 33,100630 (IF 2.7)
• Drozdova P., Rivarola-Duarte L., D. Bedulina, D. Axenov-Gribanov, S. Schreiber, A. Gurkov, Zh. Shatilina, K. Vereshchagina, Y. Lubyaga, E. Madyarova, C. Otto, F. Jühling, W. Busch, L. Jakob, M. Lucassen, F. J. Sartoris, J. Hackermüller, S. Hoffmann, H.O. Pörtner, T. Luckenbach, M.Timofeyev, P.F. Stadler (2019) Comparison between transcriptomic responses to short-term stress exposures of a common Holarctic and endemic Lake Baikal amphipods. BMC Genomics. Volume 20, Article number: 712 (Q1, IF 3.4)
• Shchapova, E.; Nazarova, A.; Gurkov, A.; Borvinskaya, E.; Rzhechitskiy, Y.; Dmitriev, I.; Meglinski, I.; Timofeyev, M. Application of PEG-Covered Non-Biodegradable Polyelectrolyte Microcapsules in the Crustacean Circulatory System on the Example of the Amphipod Eulimnogammarus verrucosus. Polymers 2019, 11, 1246.
• A.Gurkov, L.Rivarola-Duarte, D.Bedulina, I.Fernández Casas, H. Michael, P.Drozdova, A.Nazarova, E.Govorukhina, M.Timofeyev, P.F. Stadler, T. Luckenbach (2019) "Indication of ongoing amphipod speciation in Lake Baikal by genetic structures within endemic species". BMC Evolutionary Biology. 19:138
• P. Drozdova, D. Bedulina, E. Madyarova, L. Rivarola-Duarte, S. Schreiber, P. F. Stadler, T. Luckenbach, M. Timofeyev (2019) "Description of strongly heat-inducible heat shock protein 70 transcripts from Baikal endemic amphipods", Scientific reports, 9,  8907 
• Golubev A.P. Comparative assessment of the ability to self-fertilization in dominant and rare species of freshwater pulmonates / A.P. Golubev, A.S. Khomich, D.V. Axenov-Gribanov, Y.A. Lubyaga, Z.M. Shatilina, Y.A. Shirokova, O.A. Bodilovskaya / Contemporary problems of ecology. – 2019. – V. 12, № 5. – P. 482-490
• Kochneva A. The first transcriptomic resource for the flatworm Triaenophorus nodulosus (Cestoda: Bothriocephalidea), a common parasite of holarctic freshwater fish / A. Kochneva, P. Drozdova, E. Borvinskaya // Marine genomics.– 2019.  doi.: 10.1016/j.margen.2019.100702Get
• Moore M.V. Trophic coupling of the microbial and the classical food web in Lake Baikal, Siberia / M.V. Moore, B.T. Jr. De Stasio, K.N. Huizenga, E.A. Silow // Freshwater Biology. – 2019. – V. 64, N 1. – P. 138-151. DOI: 10.1111/fwb.13201. 
• Stom D.I. Application of biofuel cells in state assessment of activated sludge from treatment plants// Stom D.I., Zhdanova G.O., Saksonov M.N., Barbora L.,  Xie B.Z., Gorbunova J.O., Fialkov V.A., Kupchinsky A.B., Beschkov V.N.  Izvestiya vuzov-prikladnaya khimiya i biotekhnologiya, 2019. -  Т. 9. № 3 (30). – С. 477-488. DOI: 10.21285/2227-2925-2019-9-3-477-488
• Takhteev V.V. Diel vertical migrations of hydrobionts in the coastal area of Lake Baikal / V.V. Takhteev, D.Yu. Karnaukhov, E.B. Govorukhina, A.S. Misharin // Inland Water Biology.– 2019.–Vol. 12, № 2.– P. 178-189. DOI: 10.1134/S1995082919020147
• Yi Y. Effect of external resistance on the sensitivity of microbial fuel cell biosensor for detection of different types of pollutants / Y. Yi, B. Xie, T. Zhao, Zh. Li, D. Stom, H. Liu // Bioelectrochemistry 125 (2019). – Р. 71–78. doi.org/10.1016/j.bioelechem.2018.09.003

- 2018 -

• Dimova M., Madyarova E., Gurkov A., Drozdova P., Lubyaga Y., Kondrateva E., Adelshin R., Timofeyev M.  (2018) Genetic diversity of Microsporidia in the circulatory system of endemic amphipods from different locations and depths of ancient Lake Baikal. in press
• Borvinskaya, E., Gurkov, A., Shchapova, E., Karnaukhov, D., Sadovoy, A., Meglinski, I., Timofeyev, M. Simple and Effective Administration and Visualization of Microparticles in the Circulatory System of Small Fishes Using Kidney Injection. J. Vis. Exp. (136), e57491, doi:10.3791/57491 (2018).
• Bowman, L. L., Kondrateva, E. S., Timofeyev, M. A. and Yampolsky, L. Y. (2018), Temperature gradient affects differentiation of gene expression and SNP allele frequencies in the dominant Lake Baikal zooplankton species. Molecular ecology.  doi:10.1111/mec.14704
• Borvinskaya E., A. Gurkov, E. Shchapova, D. Karnaukhov, A.Sadovoy, I.Meglinski, Timofeyev M. Simple and effective administration and visualization of microparticles in the circulatory system of small fishes using kidney injection. Journal of Visualized Experiments, 2018 (in press)
• Gurkov, A., Borvinskaya, E., Shchapova, E., Timofeyev, M.  Restraining small decapods and amphipods for in vivo laboratory studies (2018) Crustaceana, 91 (5), pp. 517-525. 
• Borvinskaya, E., Gurkov, A., Shchapova, E., Baduev, B., Meglinski, I., Timofeyev, M. Distribution of PEG-coated hollow polyelectrolyte microcapsules after introduction into the circulatory system and muscles of zebrafish (2018) Biology Open, 7 (1), статья № bio030015,
• Shchapova, E.P., Axenov-Gribanov, D.V., Lubyaga, Y.A., Shatilina, Z.M., Vereshchagina, K.P., Madyarova, E.V., Protasov, E.S., Timofeyev, M.A. Crude oil at concentrations considered safe promotes rapid stress-response in Lake Baikal endemic amphipods (2018) Hydrobiologia, 805 (1), pp. 189-201. 

- 2017 -

• Protasov, E.S., Axenov-Gribanov, D.V., Rebets, Y.V., Voytsekhovskaya, I.V., Tokovenko, B.T., Shatilina, Z.M., Luzhetskyy, A.N., Timofeyev, M.A. The diversity and antibiotic properties of actinobacteria associated with endemic deepwater amphipods of Lake Baikal (2017) Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology, 110 (12), pp. 1593-1611.Gurkov A, Sadovoy A, Shchapova E, Teh C, Meglinski I, Timofeyev M (2017) Microencapsulated fluorescent pH probe as implantable sensor for monitoring the physiological state of fish embryos. PLoS ONE12(10): e0186548.
• Woolway, R. I., L. Carrea, C. J. Merchant, M. T. Dokulil, E. de Eyto, C. L. DeGasperi, J. Korhonen, W. Marszelewski, L. May, A. M. Paterson, A. Rimmer, J. A. Rusak, S. G. Schladow, M. Schmid, S. V. Shimaraeva, E. Silow, M. A. Timofeev, P. Verburg, S. Watanabe, and G. A. Weyhenmeyer (2017), Lake surface temperature [in “State of the Climate in 2016”]. Bull. Amer. Meteor. Soc., 98 (8), S13–S14, doi:10.1175/2017BAMSStateoftheClimate.1.
• Jakob L., D. Bedulina, D. Axenov-Gribanov, M. Ginzburg, Z. Shatilina, Y. Lubyaga, E. Madyarova, A. Gurkov, M. Timofeyev, H.O. Portner, F. Sartoris, R. Altenburger, T. Luckenbach. Uptake kinetics and subcellular compartmentalization explain lethal but not sublethal effects of cadmium in two closely related amphipod species (2017) Environmental Science & Technology (in press).
• Borvinskaya E., Gurkov A., Shchapova E., Baduev B., Shatilina Zh, Sadovoy A., Meglinski I., Timofeyev M. Parallel in vivo monitoring of pH in gill capillaries and muscles of fishes using microencapsulated biomarkers.  Biology Open 2017 6: 673-677.  
• Bowman, L.L., Jr, Kondrateva, E.S., Silow, E.A., Wilburn, P., Yampolsky, L.Y. A capital breeder in a heterogeneous environment: Lipid reserves and RNA:DNA ratio in Lake Baikal's endemic Epischura (2017) Journal of Great Lakes Research, 43 (2), pp. 280-288. 
• Axenov-Gribanov D.V., Tokovenko B.T., Rebets Y.V., Voytsekhovskaya I.V., Shatilina Z.M., Protasov E.S., Luzhetskyy A.N., Timofeyev M.A. (2017). Draft genome sequence of Streptomyces sp. IB 2014 011-1 strain, isolated from Trichoptera sp. larvae of lake Baikal, a producer of Grixazone B. Genome Announcements (American society for microbiology) DOI:10.1128/genomeA.00062-17
• O'Donnell D.R., Wilburn P., Silow E., Yampolsky L.Y., Litchman E. (2017) Nitrogen and phosphorus co-limitation of phytoplankton in Lake Baikal, Siberia: insights from the lake survey and nutrient enrichment experiments. Limnology and Oceanography (in press)
• Volkova E.K., Yanina I.Yu.,  Popov A.P., Bykov A.V.,  Gurkov A.N., Borvinskaya E.V., Timofeyev M.A., Meglinski I.V. (2017) Ecophotonics: assessment of temperature gradient in aquatic organisms using up-conversion luminescent particles, Quantum Electronics, 2017, 47 (2), 153–157
• Bedulina D.S., Meyer M.F., Gurkov A.N., Kondratjeva E.M., Baduev B.K., Gusdorf R.E., Timofeyev M.A. (2017) Intersexual differences of heat shock response between two amphipods Eulimnogammarus verrucosus and Eulimnogammarus cyaneus in Lake Baikal. PeerJ 5:e2864 

- 2016 -

• Gurkov A.,  Shchapova E., Bedulina D., Baduev B., Borvinskaya E., Meglinski I., Timofeyev M.  Remote in vivo stress assessment of aquatic animals with microencapsulated biomarkers for environmental monitoring.(2016) Scientific Reports,  6, 36427.

• Hampton S.E,…, Silow E.A.,…, Timofeyev M.A., et al. Ecology under lake ice. Ecology letters, 2016 (in press)

• Timofeyev M.A., Silow E.A., Mackay A.W., Moore M.V., Likens G.E. (2016) Safeguarding the world’s largest lake. Nature. Vol.538, № 7623, pp. 41

• Vereshchagina K., Shatilina Z., Bedulina D., Gurkov A., Axenov-Gribanov D., Kondrateva E., Gubanov M., Zadereev E., Sokolova I.M. and Timofeyev M. Salinity modulates thermotolerance, energy metabolism and stress response in amphipods Gammarus lacustris. PeerJ. 2016 (in press)

• Axenov-Gribanov D, Bedulina D, Shatilina Z, Jakob L, Vereshchagina K, Lubyaga Y, et al. (2016) Thermal Preference Ranges Correlate with Stable Signals of Universal Stress Markers in Lake Baikal Endemic and Holarctic Amphipods. PLoS ONE 11(10): e0164226. doi:10.1371/journal.pone.0164226

• Axenov-Gribanov D.V., I.V. Voytsekhovskaya, Y.V. Rebets, B.T. Tokovenko, T.A. Penzina, T.G. Gornostay, R.V. Adelshin, E.S. Protasov, A.N. Luzhetskyy, M.A. Timofeyev  "Actinobacteria possessing antimicrobial and antioxidant activities isolated from the pollen of scots pine (Pinus sylvestris) grown on the Baikal shore". Antonie van Leeuwenhoek Journal of Microbiology (2016) doi: 10.1007/s10482-016-0730-5.

• Meyer M., Hampton S., Ozersky T., Rusanovskaya O., Woo K. (2016) Vulnerability of rotifers and copepod nauplii to predation by Cyclops kolensis (Crustacea, Copepoda) under varying temperatures in Lake Baikal, Siberia. Hydrobiologia. in press.

• Karnaukhov D.Yu., Bedulina D.S., Kaus A., Prokosov S.O., Sartoris L., Timofeyev M.A., Takhteev V.V.    Behavior of Lake Baikal amphipods as a part of the night migratory complex in the Kluevka settlement region (South-Eastern Baikal). Crustaceana, 2016,  88(4): 419-430.

• Kraemer B.M. , S.Chandra, A.I. Dell, M. Dix, E. Kuusisto, D.M. Livingstone, G. Schladow, E.Silow, L.M. Sitoki, R. Tamatamah, P.B. Mcintyre. Global patterns in lake ecosystem responses to warming based on the temperature dependence of metabolism. Global change biology (2016). doi:10.1111/gcb.13459.

• Kobanova G.I., Takhteev V.V., Timofeyev M.A., Rusanovskaya O.O. (2016) Lake Baikal Ecosystem Faces the Threat of Eutrophication. International Journal of Ecology  Volume 2016, Article ID 6058082. 

• E.A. Silow, L.S. Krashchuk, K.A. Onuchin, H.V. Pislegina, O.O. Rusanovskaya, S.V. Shimaraeva. Some recent trends regarding Lake Baikal phytoplankton and zooplankton, Lakes and Reservoirs: Research and Management, 2016, Volume 21, Issue 1, pages 40–44. 

• Jakob L., D.V. Axenov-Gribanov, A. Gurkov, M. Ginzburg, D. Bedulina, M. Timofeyev, T. Luckenbach, M. Lucassen, F. Sartoris, Hans-O. Pörtner. Lake Baikal  amphipods under climate change: Thermal constraints and ecological consequences. Ecosphere,  V.7, I.3, 2016.

• Axenov-Gribanov D.V., Voytsekhovskaya I.V., Tokovenko B.T., Protasov E.S., Gamaiunov S.V., Rebets Y.V., Luzhetskyy A.N., Timofeyev M.A. (2016) Actinobacteria isolated from an underground lake and moonmilk speleothem from the biggest conglomeratic rarstic cave in Siberia as sources of novel biologically active compounds. PLoS ONE 11(2): e0149216. doi:10.1371/journal.pone.0149216

• Axenov-Gribanov D., Rebets Y., Tokovenko B., Voytsekhovskaya I., Timofeyev M., Luzhetskyy A. The isolation and characterization of actinobacteria from dominant benthic macroinvertebrates endemic to Lake Baikal. Folia Microbiologica, March 2016, Volume 61, Issue 2, pp 159-168

• Izmest’eva L.R, M.V. Moore, S.E. Hampton, C.J. Ferwerda, D.K. Gray, K.H. Woo, H.V. Pislegina, L.S. Krashchuk, S.V. Shimaraeva, E.A. Silow «Lake-wide physical and biological trends associated with warming in Lake Baikal» // Journal of Great Lakes Research. – 2016. – V. 42, N1. Pages 6–17.

- 2015 -

• O'Reilly C.M., …, L.R. Izmest'eva,…, E. Silow,... et al. “Rapid and highly variable warming of lake surface waters around the globe», Geophysical Research Letters, Geophysical Research Letters, Volume 42, Issue 24,  2015, P. 773–781.  

• Takhteev V.V., Berezina N.A., Sidorov D.A. Checklist of the Amphipoda (Crustacea) from continental waters of Russia, with data on alien species. Arthropoda Selecta. 2015. Vol.24. No.3: 335–370.

• Povarintsev A.I., Fefelov I.V. "Spring migration of Falconiformes in the southern Baikal migratory corridor: Peculiarities of migration and its relation with landscape–climatic conditions". 2015, Volume 8, Issue 6, pp. 703-714.

• Luckenbach T., D. Bedulina, M. Timofeyev.  Is the Endemic Fauna of Lake Baikal Affected by Global Change? In Karthe, Daniel; Chalov, Sergey; Kasimov, Nikolay und Kappas, Martin (eds.) «Water and environment in the Selenga-Baikal basin:  International research cooperation for an ecoregion of global relevance» (Ibidem-Verlag, Stuttgart). 2015. P. 219-235. 

• Shimaraeva S.V., L.R. Izmestyeva, L.S. Krashchuk, H.V. Pislegina, E.A. Silow.  The influence of BPPC on Baikal plankton – comparative study of  phytoplankton in the point of influence of BPPC purified waste waters and in the reference clean point in 2005-2006 years. In Karthe, Daniel; Chalov, Sergey; Kasimov, Nikolay und Kappas, Martin (eds.) «Water and environment in the Selenga-Baikal basin: International research cooperation for an ecoregion of global relevance» (Ibidem-Verlag, Stuttgart). 2015. P. 237-251.

• Tarasova A.S., Stom D.I., Kudryasheva, N.S. Antioxidant activity of humic substances via bioluminescent monitoring in vitro. Environmental Monitoring and Assessment (2015) 187:89 DOI 10.1007/s10661-015-4304-1

• Katz S., Izmestyeva L., Hampton S., Ozersky T., Shchapov K., Moore M., Shimaraeva S., Silow E. The “Melosira years” of Lake Baikal: winter environmental conditions at ice onset predict under-ice algal blooms in spring. Limnology and Oceanography, 60 (6) pp. 1950 - 1964.

• Madyarova EV, Adelshin RV, Dimova MD, Axenov-Gribanov DV, Lubyaga YA, Timofeyev MA (2015) Microsporidian Parasites Found in the Hemolymph of Four Baikalian Endemic Amphipods. PLoS ONE 10(6): e0130311. doi:10.1371/journal.pone.0130311

• Kraemer B.M.,… E.Silow,.. et al., Morphometry and average temperature affect lake stratification responses to climate change. Geophysical Research Letters. 2015, Volume 42, Issue 12, Pages 4981–4988.

• Axenov-Gribanov D., Vereshchagina K., Lubyaga Y., Gurkov A., Bedulina D., Shatilina Zh., Homich A., Golubev A., Timofeyev M. Stress response at the cellular and biochemical levels indicates the limitation of the environmental temperature range for eastern Siberian populations of the common gastropod Lymnaea stagnalis. Malacologia, vol. 59(1), 33-44, 2015. 

• Sharma, S… L.R. Izmest’eva, E.A. Silow… et al. A global database of lake surface temperatures collected by in situ and satellite methods from 1985–2009. Scientific Data (Nature Publishing Group) 2:150008 doi: 10.1038/sdata.2015.8 (2015).  

• Ermakov E.L., Rusanovskaya O.O. Seasonal dynamics of the phenotypic structure of a natural Epischura baicalensis Sars population from quantitative morphological traits. Contemporary Problems of Ecology. 2015, Volume 8, Issue 2, pp 193-201

• E. V. Fedoseeva, D. I. Stom. Preference and avoidance reactions in some Baikalian amphipods and holarctic Gammarus lacustris Sars, 1863 in response to a humic-containing preparation.  Journal Inland Water Biology, Volume 8, Issue 2, pp 130-135, 2015

• Markov, S.A., Protasov, E.S., Bybin, V.A., Eivazova, E.R., Stom, D.I. Using immobilized cyanobacteria and culture medium contaminated with ammonium for H2 production in a hollow-fiber photobioreactor (2015) International Journal of Hydrogen Energy, 40 (14), pp. 4752-4757. 

• V.V.Pavlichenko, M.V. Protopopova, M.Timofeyev, T. Luckenbach. Identification of a putatively multixenobiotic resistance related Abcb1 transporter in amphipod species endemic to the highly pristine Lake Baikal. Environmental Science and Pollution Research, April 2015, Volume 22, Issue 7, pp 5453-5468.

• Государственный  доклад «О  состоянии  озера Байкал и мерах по его  охране  в 2014 году».- Иркутск: Сибирский филиал ФГУНПП «Росгеолфонд», 2015.- 436 с.  

- 2014 -

• Bedulina, D.S., Takhteev, V.V., Pogrebnyak, S.G., Govorukhina, E.B., Madyarova, E.V., Lubyaga, Y.A., Vereshchagina, K.P., Timofeyev, M.A., Luckenbach, T.  On Eulimnogammarus messerschmidtii, sp. n. (Amphipoda: Gammaridea) from Lake Baikal, Siberia, with redescription of E. cyanoides (Sowinsky) and remarks on taxonomy of the genus Eulimnogammarus (2014) Zootaxa, 3838 (5), pp. 518-544. 

• Takhteev V.V., PakhomovE.A. Review. Crustaceana, 2014, Volume 87, Issue 13, pages 1591 – 1592

• Silow E.A. Lake Baikal: Current Environmental Problems. In Encyclopedia of Environmental Management. Taylor and Francis: New York, Published online. 2014; 1-9. ( DOI: 10.1081/E-EEM-120050578)

• Hampton, S.E., Gray, D.K., Izmest'eva, L.R., Moore, M.V., Ozersky, T. The rise and fall of plankton: Long-term changes in the vertical distribution of algae and grazers in Lake Baikal, Siberia (2014) PLoS ONE, 9 (2), art. no. e88920 . 

• Axenov-Gribanov, D.V., Bedulina, D.S., Shatilina, Z.M., Lubyaga, Y.A., Vereshchagina, K.P., Timofeyev, M.A. A cellular and metabolic assessment of the thermal stress responses in the endemic gastropod Benedictia limnaeoides ongurensis from Lake Baikal (2014) Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 167 (1), pp. 16-22. 

• Rivarola-Duarte, L., Otto, C., Jühling, F., Schreiber, S., Bedulina, D., Jakob, L., Gurkov, A., Axenov-Gribanov, D., Sahyoun, A.H., Lucassen, M., Hackermüller, J., Hoffmann, S., Sartoris, F., Pörtner, H.-O., Timofeyev, M., Luckenbach, T., Stadler, P.F. A first Glimpse at the genome of the Baikalian amphipod Eulimnogammarus verrucosus (2014) Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 322 (3), pp. 177-189. 

• Stom et al. "The influence of pharmaceutical vermipreparations on the test-reaction of organisms of the different levels of the organization". Pharmacognosy Research, 2014.- Vol.6, Issue 3, pp.5-8.

• Государственный  доклад «О  состоянии  озера Байкал и мерах по его  охране  в 2013 году».- Иркутск: Сибирский филиал ФГУНПП «Росгеолфонд», 2014.- 462 с.  

- 2013 -

• Stom, D.I., Fedoseeva, E.V. Effect of hydrogen peroxide on Behavioural reactions and survival of various Lake Baikal amphipods and Holarctic Gammarus Lacustris G. O. Sars, 1863 (2013) Crustaceana, 86 (9), pp. 1139-1154. 

• Scheef, L.P., Hampton, S.E., Izmest'eva, L.R. Inferring plankton community structure from marine and freshwater long-term data using multivariate autoregressive models (2013) Limnology and Oceanography: Methods, 11 (SEP), pp. 475-484. 

• Golubev, A.P., Bodilovskaya, O.A., Slesareva, L.E., Shavel, A.A., Timofeyev, M.A. Population dynamics of the pulmonate mollusk Lymnaea stagnalis under the conditions of prolonged reproduction by self-fertilization (2013) Doklady Biological Sciences, 452 (1), pp. 300-304. 

• Silow, E.A., Mokry, A.V. Exergy as a tool for ecosystem health assessment (2013) Entropy, 15 (4), pp. 902-925. 

• Xu, F.-L., Jorgensen, S.E., Shimizu, Y., Silow, E. Persistent organic pollutants in fresh water ecosystems (2013) The Scientific World Journal, 2013, art. no. 303815. 

• Bedulina, D.S., Evgen'Ev, M.B., Timofeyev, M.A., Protopopova, M.V., Garbuz, D.G., Pavlichenko, V.V., Luckenbach, T., Shatilina, Z.M., Axenov-Gribanov, D.V., Gurkov, A.N., Sokolova, I.M., Zatsepina, O.G. Expression patterns and organization of the hsp70 genes correlate with thermotolerance in two congener endemic amphipod species (Eulimnogammarus cyaneus and E. verrucosus) from Lake Baikal (2013) Molecular Ecology, 22 (5), pp. 1416-1430. 

• Scheef, L.P., Hampton, S.E., Izmest'eva, L.R. Inferring plankton community structure from marine and freshwater long-term data using multivariate autoregressive models (2013) Limnology and Oceanography: Methods, 11 (SEP), pp. 475-484. 

- 2012 -

• Tarasova, A.S., Kislan, S.L., Fedorova, E.S., Kuznetsov, A.M., Mogilnaya, O.A., Stom, D.I., Kudryasheva, N.S. Bioluminescence as a tool for studying detoxification processes in metal salt solutions involving humic substances (2012) Journal of Photochemistry and Photobiology B: Biology, 117, pp. 164-170.  

• Silow, E.A. Exergy changes in lakes around the world under pressure from Global change (2012) Archives des Sciences, 65 (1-2), pp. 209-214. 

• Gurkov, A.N., Axenov-Gribanov, D.V., Pavlichenko, V.V., Shakhtanova, N.S., Bedulina, D.S., Timofeyev, M.A., Kalchenko, V., Meglinski, I. Eco-Photonics: Application of optical diagnostic modalities for non-invasive monitoring and evaluation of stress conditions of aquatic organisms (2012) Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 8337, art. no. 83370K. 

• Hofmann, S., Timofeyev, M.A., Putschew, A., Saul, N., Menzel, R., Steinberg, C.E.W.Leaf litter leachates have the potential to increase lifespan, body size, and offspring numbers in a clone of Moina macrocopa (2012) Chemosphere, 86 (9), pp. 883-890. 

- 2011 -

• Axenov-Gribanov, D.V., Gurkov, A.N., Shakhtanova, N.S., Bedulina, D.S., Timofeyev, M.A., Meglinski, I. Optical diagnostic test of stress conditions of aquatic organisms (2011) Journal of Biophotonics, 4 (9), pp. 619-626. 

• Izmest'eva, L.R., Silow, E.A., Litchman, E. Long-term dynamics of Lake Baikal pelagic phytoplankton under climate change (2011) Inland Water Biology, 4 (3), pp. 301-307. 

• Tarasova, A.S., Stom, D.I., Kudryasheva, N.S. Effect of humic substances on toxicity of inorganic oxidizer bioluminescent monitoring (2011) Environmental Toxicology and Chemistry, 30 (5), pp. 1013-1017. 

• Rozhko, T., Bondareva, L., Mogilnaya, O., Vydryakova, G., Bolsunovsky, A., Stom, D., Kudryasheva, N. Detoxification of AM-241 solutions by humic substances: Bioluminescent monitoring (2011) Analytical and Bioanalytical Chemistry, 400 (2), pp. 329-334. 

• Shatilina, Z.M., Wolfgang Riss, H., Protopopova, M.V., Trippe, M., Meyer, E.I., Pavlichenko, V.V., Bedulina, D.S., Axenov-Gribanov, D.V., Timofeyev, M.A. The role of the heat shock proteins (HSP70 and sHSP) in the thermotolerance of freshwater amphipods from contrasting habitats (2011) Journal of Thermal Biology, 36 (2), pp. 142-149. 

• Katz, S.L., Hampton, S.E., Izmest'eva, L.R., Moore, M.V. Influence of long-distance climate teleconnection on seasonality of water temperature in the world's largest lake - Lake Baikal, Siberia (2011) PLoS ONE, 6 (2), art. no. e14688

• Timofeyev M.A., Protopopova M.V. Stress resistance mechanisms in amphipods from Lake Baikal along a gradient of thermal change with emphasis on HSPs and antioxidant enzymes// in  Cipriano R.C., Bruckner A.W., Shchelkunov I.S., editors. 2011. – Bridging America and Russia with shared perspectives on aquatic animal health. Shepherdstown, West Virginia, USA, 2011 – P. 276 – 283.  

• Katz SL, Hampton SE, Izmest'eva LR, Moore MV (2011) Influence of Long-Distance Climate Teleconnection on Seasonality of Water Temperature in the World's Largest Lake - Lake Baikal, Siberia. PLoS ONE 6(2): e14688. doi: 10.1371/journal.pone.0014688

- 2010 -

• Shatilina, Z.M., Gubanov, M.V., Zadereev, E.S., Pavlichenko, V.V., Axenov-Gribanov, D.V., Sapozhnikova, E.A., Protopopova, M.V., Bedulina, D.S., Timofeyev, M.A. Comparative study of Thermoresistances' cellular mechanisms in representatives of the Gammarus lacustris Sars populations inhabiting Saline Lake Shira (Republic of Khakassia) and a fresh water body in the Cis-Baikal region (2010) Doklady Biological Sciences, 434 (1), pp. 359-362. 

• Timofeyev, M.A., Kirichenko, K.A., Shatilina, Z.M., Rokhin, A.V., Pobezhimova, T.P. Attitude of Baikal and Palearctic amphipods to oxygen as a factor of environment and mechanism of adaptation to its lowered level (2010) Contemporary Problems of Ecology, 3 (5), pp. 522-527. 

• Shatilina, Z.M., Bedulina, D.S., Protopopova, M.V., Pavlichenko, V.V., Pobezhimova, T.P., Grabelnykh, O.I., Timofeyev, M.A. Heat Shock Proteins in the Mechanisms of Stress Adaptation in Baikal Amphipods and Palaearctic Gammarus lacustris Sars II. Small HSP Family (2010) Contemporary Problems of Ecology, 3 (4), pp. 449-456. 

• Steinberg, C.E.W., Ouerghemmi, N., Herrmann, S., Bouchnak, R., Timofeyev, M.A., Menzel, R. Stress by poor food quality and exposure to humic substances: Daphnia magna responds with oxidative stress, lifespan extension, but reduced offspring numbers (2010) Hydrobiologia, 652 (1), pp. 223-236. 

• Shatilina, Z.M., Pobezhimova, T.P., Grabel'nykh, O.I., Bedulina, D.S., Protopopova, M.V., Pavlichenko, V.V., Timofeev, M.A. Heat shock proteins in the mechanisms of stress adaptation in Baikal amphipods and palearctic Gammarus lacustris Sars. I. HSP70 family (2010) Contemporary Problems of Ecology, 3 (1), pp. 41-49. 

• Silow, E.A., Mokry, A.V. Exergy as a tool for ecosystem health assessment (2010) Entropy, 12 (4), pp. 902-925. 

• Bedulina, D.S., Zimmer, M., Timofeyev, M.A. Sub-littoral and supra-littoral amphipods respond differently to acute thermal stress (2010) Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 155 (4), pp. 413-418. 

• Bedulina, D.S., Timofeyev, M.A., Zimmer, M., Zwirnmann, E., Menzel, R., Steinberg, C.E.W. Different natural organic matter isolates cause similar stress response patterns in the freshwater amphipod, Gammarus pulex (2010) Environmental Science and Pollution Research, 17 (2), pp. 261-269. 

- 2009 -

• Timofeyev, M.A., Protopopova, M., Pavlichenko, V., Steinberg, C.E.W. Can acclimation of amphipods change their antioxidative response? (2009) Aquatic Ecology, 43 (4), pp. 1041-1045. 

• Timofeyev, M.A., Shatilina, Z.M., Protopopova, M.V., Bedulina, D.S., Pavlichenko, V.V., Kolesnichenko, A.V., Steinberg, C.E.W. Thermal stress defense in freshwater amphipods from contrasting habitats with emphasis on small heat shock proteins (sHSPs) (2009) Journal of Thermal Biology, 34 (6), pp. 281-285. 

• Moore, M.V., Hampton, S.E., Izmest'Eva, L.R., Silow, E.A., Peshkova, E.V., Pavlov, B.K. Climate change and the world's "sacred sea"-lake Baikal, Siberia (2009) BioScience, 59 (5), pp. 405-417. 

• Stom, D.I., Klyuchevskaya, A.A., Stom, A.D., Balayan, A.E. Experimental study of some Siberian and Baikal endemic species of hydrobionts: Comparative analysis of oxyphility and frigophility (2009) Contemporary Problems of Ecology, 2 (1), pp. 51-54. 

• Steinberg C.E.W., Timofeyev M.A. and Menzel R. Dissolved Humic Substances: Interactions with Organisms. In: Gene E. Likens, (Editor) Encyclopedia of Inland Waters. V. 2, P. 747-753, 2009, Oxford: Elsevier. 

• Тимофеев М.А. Активация  антиоксидантной  системы  у байкальского литорального  вида  Eulimnogammarus  verrucosus// Известия Самарского Научного Центра РАН  2009. Т. 11. 1. 177-180.

- 2008 -

• Hampton, S.E., Izmest'eva, L.R., Moore, M.V., Katz, S.L., Dennis, B., Silow, E.A. Sixty years of environmental change in the world's largest freshwater lake - Lake Baikal, Siberia (2008) Global Change Biology, 14 (8), pp. 1947-1958.  

• Peters, J.L., Zhuravlev, Y.N., Fefelov, I., Humphries, E.M., Omland, K.E. Multilocus phylogeography of a Holarctic duck: Colonization of North America from Eurasia by gadwall (Anas strepera) (2008) Evolution, 62 (6), pp. 1469-1483.

• Timofeev, M.A., Shatilina, Zh.M., Bedulina, D.S., Protopopova, M.V., Kolesnichenko, A.V. Application of heat shock proteins as stress markers in aquatic organisms using endemic Baikal amphipods as an example (2008) Applied Biochemistry and Microbiology, 44 (3), pp. 310-313. 

• Timofeyev, M.A., Shatilina, Z.M., Bedulina, D.S., Protopopova, M.V., Pavlichenko, V.V., Grabelnych, O.I., Kolesnichenko, A.V. Evaluation of biochemical responses in Palearctic and Lake Baikal endemic amphipod species exposed to CdCl2 (2008) Ecotoxicology and Environmental Safety, 70 (1), pp. 99-105. 

• Steinberg, C.E.W., Meinelt, T., Timofeyev, M.A., Bittner, M., Menzel, R. Humic substances - Part 2: Interactions with organisms (2008) Environmental Science and Pollution Research, 15 (2), pp. 128-135.

• Чепинога А.В., Чепинога А.А., Гнутиков А.А., Тимофеев М.А. Обзор кариологической изученности флоры байкальского региона. Известия Самарского Научного Центра РАН,  2008, Т. 10, 5/1,  С. 68-73.

• Колесниченко А.В., М.А.Тимофеев, М.В. Протопопова. Токсичность наноматериалов - 15 лет исследований. Российские нанотехнологии, 2008, Т. 3, № 3-4,  С. 54 - 61.

- 2007 -

• Fedorova, E., Kudryasheva, N., Kuznetsov, A., Mogil'naya, O., Stom, D. Bioluminescent monitoring of detoxification processes: Activity of humic substances in quinone solutions (2007) Journal of Photochemistry and Photobiology B: Biology, 88 (2-3), pp. 131-136. 

• Peters, J.L., Zhuravlev, Y., Fefelov, I., Logie, A., Omland, K.E. Nuclear loci and coalescent methods support ancient hybridization as cause of mitochondrial paraphyly between gadwall and falcated duck (Anas spp.) (2007) Evolution, 61 (8), pp. 1992-2006. 

• Timofeyev, M.A., Shatilina, Z.M., Bedulina, D.S., Menzel, R., Steinberg, C.E.W. Natural organic matter (NOM) has the potential to modify the multixenobiotic resistance (MXR) activity in freshwater amphipods Eulimnogammarus cyaneus and E. verrucosus (2007) Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 146 (4), pp. 496-503. 

• Timofeyev, M., Shatilina, Z. Different preference reactions of three Lake Baikal endemic amphipods to temperature and oxygen are correlated with symbiotic life (2007) Crustaceana, 80 (2), pp. 129-138. 

• Тимофеев М.А.  Изучение  активности некоторых антиоксидантных ферментов у байкальских амфипод,  локализация и размерно-возрастная зависимость. Сибирский экологический журнал, 2007, №4, С. 521 – 526.  

- 2006 -

• Fefelov, I.V., Tupitsyn, I.I., Podkovyrov, V.A. On the population structure of waterbirds from the Selenga River delta and Lake Baikal basin (2006) Zoologicheskii Zhurnal, 85 (9), pp. 1143-1151. 

• Timofeyev, M.A., Steinberg, C.E.W. Antioxidant response to natural organic matter (NOM) exposure in three Baikalean amphipod species from contrasting habitats (2006) Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 145 (2), pp. 197-203. 

• Timofeyev, M.A., Shatilina, Z.M., Kolesnichenko, A.V., Bedulina, D.S., Kolesnichenko, V.V., Pflugmacher, S., Steinberg, C.E.W. Natural organic matter (NOM) induces oxidative stress in freshwater amphipods Gammarus lacustris Sars and Gammarus tigrinus (Sexton) (2006) Science of the Total Environment, 366 (2-3), pp. 673-681. 

• Steinberg, C.E.W., Kamara, S., Prokhotskaya, V.Y., Manusadžianas, L., Karasyova, T.A., Timofeyev, M.A., Jie, Z., Paul, A., Meinelt, T., Farjalla, V.F., Matsuo, A.Y.O., Burnison, B.K., Menzel, R. Dissolved humic substances - Ecological driving forces from the individual to the ecosystem level? (2006) Freshwater Biology, 51 (7), pp. 1189-1210. 

• Timofeyev, M.A., Shatilina, Z.M., Kolesnichenko, A.V., Kolesnichenko, V.V., Steinberg, C.E.W. Specific antioxidant reactions to oxidative stress promoted by natural organic matter in two amphipod species from Lake Baikal (2006) Environmental Toxicology, 21 (2), pp. 104-110. 

• Timofeyev, M.A. Antioxidant enzyme activity in endemic Baikalean versus Palaearctic amphipods: Tagma- and size-related changes (2006) Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 143 (3), pp. 302-308. 

• Тимофеев М.А., Шатилина Ж.М., Колесниченко А.В. Токсичность солей кадмия для байкальских эндемичных амфипод, некоторые биохимические последствия. Сибирский экологический журнал, 2006, №2, C. 243-248. 

   

- 2005 -

• Fedorova, E.S., Kudryasheva, N.S., Kuznetsov, A.M., Stom, D.I., Belyj, A.V., Sizykh, A.G. Detoxication of organic oxidizers by humic compounds. Bioluminescence monitoring (2005) Doklady Akademii Nauk, 403 (4), pp. 554-556. 

• Fedorova, E.S., Kudryasheva, N.S., Kuznetsov, A.M., Stom, D.I., Belyi, A.V., Sizykh, A.G. Detoxication of solutions of organic oxidants by humic substances: bioluminescence monitoring (2005) Doklady Biochemistry and Biophysics, 403 (1-6), pp. 300-302.  

• Таганов И.Н., Н.Л. Денисов, М.А. Тимофеев, А.О. Бринкен. Микроэлементы и тяжелые металлы в доминирующих гидробионтах оз. Байкал. Сообщение II. Изв. РГО, 2005, Т.137, Вып. 2, C. 76 - 82.

- 2004 -

• Silow, E.A., In-Hye, O. Aquatic ecosystem assessment using exergy (2004) Ecological Indicators, 4 (3), pp. 189-198. 

• Тимофеев М.А., К.А. Кириченко. Экспериментальная оценка роли абиотических факторов в ограничении распространения эндемиков за пределы оз. Байкал, на примере амфипод. Сибирский экологический журнал, 2004, №1, C. 41–50.

• Wiegand C., Meems N., Timofeyev M.A., Steinberg C., Pflugmacher S.  More evidence for humic substances acting as biogeochemicals on organisms. In: Humic Substances: Nature's  Most Versatile Materials. Eds. E. A. Ghabbour and G. Davies, Francis & Taylor New York. 2004, P. 340-372

• Timofeyev, M.A., Wiegand, C., Burnison, B.K., Shatilina, Z.M., Pflugmacher, S., Steinberg, C.E.W. Impact of natural organic matter (NOM) on freshwater amphipods (2004) Science of the Total Environment, 319 (1-3), pp. 115-121. 

- 2003 -

• Matveeva, O.N., Neretina, O.V., Belik, N.A., Baranskaya, V.K., Proidakov, A.G., Stom, D.I., Kushnarev, D.F. A Study on the Process of Hexadecane Conversion by Organisms of Different Trophic Levels (2003) Petroleum Chemistry, 43 (5), pp. 359-363. 

• Stom, D.I., Potapov, D.S., Balayan, A.E., Matveeva, O.N. Transformation of Oil in soil by a microbial preparation and earthworms (2003) Eurasian Soil Science, 36 (3), pp. 329-331.

• Matveeva, O.N., Neretina, O.V., Belik, N.A., Baranskaya, V.K., Projdakov, A.G., Stom, D.I., Kushnarev, D.F. A study on the process of hexadecane conversion by organisms of different trophic levels (2003) Neftekhimiya, 43 (5), p. 396. 

- 2002 -

• Nozaki, K., Morino, H., Munehara, H., Sideleva, V.G., Nakai, K., Yamauchi, M., Kozhova, O.M., Nakanishi, M. Composition, biomass, and photosynthetic activity of the benthic algal communities in a littoral zone of Lake Baikal in summer (2002) Limnology, 3 (3), pp. 175-180. 

• Balayan, A.E., Stom, D.I. Sponges as toxicological bioassay test organisms (2002) Hydrobiological Journal, 38 (6), pp. 66-71. 

• Kudryasheva, N., Vetrova, E., Kuznetsov, A., Kratasyuk, V., Stom, D. Bioluminescence assays: Effects of quinones and phenols (2002) Ecotoxicology and Environmental Safety, 53 (2), pp. 221-225. 

- 2001 -

• Saksonov, M.N., Balayan, A.E., Stomm, D.I. Luminescent Spectroscopy in Determining Oil Product Accumulation in Epishura and Bioassaying of Pollution (2001) Water Resources, 28 (6), pp. 688-690. 

• Silow, E.A., Baturin, V.A., Stom, D.J. Prediction of Lake Baikal ecosystem behaviour using an ecosystem disturbance model (2001) Lakes and Reservoirs: Research and Management, 6 (1), pp. 33-36. 

• Stom, D.I., Geel, T.A. Toxic action of organic compounds and heavy metals on Epischura Baicalensis and Daphnia Magna in the presence of fodder organisms (2001) Hydrobiological Journal, 37 (4), pp. 130-136. 

• Fefelov, I.V. Comparative breeding ecology and hybridization of Eastern and Western Marsh Harriers Circus spilonotus and C. aeruginosus in the Baikal region of Eastern Siberia (2001) Ibis, 143 (4), pp. 587-592. 

- 2000 -

• Kudryasheva, N.S., Esimbekova, E.N., Kudinova, I.Yu., Kratasyuk, V.A., Stom, D.I. Effects of quinones on NADH-Dependent enzymatic bioluminescent systems (2000) Prikladnaya Biokhimiya i Mikrobiologiya, 36 (4), p. 478. 

• Kozhova, O.M., Izmestyeva, L.R., Krashchuk, L.S. Monitoring of the chlorophyll a content in the Bratsk reservoir (2000) Hydrobiological Journal, 36 (1), pp. 52-59. 

• Kozhova, O.M., Kobanova, G.I., Izmestyeva, L.R. Summer phytoplankton of Lake Khubsugul (Mongolia) (2000) Hydrobiological Journal, 36 (3), pp. 133-136. 

• Kozhova, O.M., Erbaeva, E.A., Safronov, G.P. The benthic invertebrates of Lake Khubsugul, Mongolia (2000) Advances in Ecological Research, 31, pp. 97-124. 

• Kudryasheva, N.S., Esimbekova, E.N., Kudinova, I.Yu., Kratasyuk, V.A., Stom, D.I. Effects of quinones on NADH-dependent enzymatic bioluminescent systems (2000) Applied Biochemistry and Microbiology, 36 (4), pp. 409-413.